NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007791_10001244

Scaffold Ga0007791_10001244


Overview

Basic Information
Taxon OID3300004772 Open in IMG/M
Scaffold IDGa0007791_10001244 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9062
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F000852Metagenome / Metatranscriptome860Y
F001043Metagenome / Metatranscriptome794Y
F001460Metagenome / Metatranscriptome690Y
F002071Metagenome / Metatranscriptome596Y
F003422Metagenome / Metatranscriptome487Y
F005177Metagenome / Metatranscriptome409Y
F011299Metagenome / Metatranscriptome292Y
F013527Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0007791_1000124411F003422N/AMLVNVSSIVYNTRMTHYQKYTWICPSDCDALIEYTFKDGYGWPAGVMELTCRCGTDCILLSVEDATIPYTDSLLPTKEEKMEETTIGSDALHSPAVEYNPDLLVTYKVIHGYSDPEYTTSKVTSLEWDLHNARQAQKTNGVLTNKISLVKDIITEAYADSQDQDTLRDIAEALGIELTRTIEWSATIEVSGTMDIDILEDVDVEQEIYDNLYVESQNGQIEIGDIEVCNVREC*
Ga0007791_1000124412F000311GAGMYFELTAPDRLSLEMAYWDAQIMGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLKESYWSDKEATGY*
Ga0007791_1000124413F001043AGGAGMSDYKDGFDDGYKFAREEIMEKLSEIDIADIDSWILDRLSEMIEGGAL*
Ga0007791_1000124415F000450GGCGGMGDRANFVFVQPNGHSIVLYGHWAGHNMLANLAEAAIKAQGRWSDPSYATRITISNMIGEGWAMETGWGLSVDEIQDNEHKIAVIDFAQQTFSLHEEVPHADASSKVRGMSNDAIFTQDLSNFCEKYSDSLVRV*
Ga0007791_1000124418F001460AGGAGMLGYTKEDLDRMTNAVHDAKLFYLRTPSDLMDKEPLRKDLEDAVSFFQGLWAEGYFD*
Ga0007791_100012442F013527AGAAGGMEIFEFNTFIDVEAESYDEAIDVFQFQLKYGINKDNVYVADIKQLTNNNESVEV*
Ga0007791_1000124424F000852GGAMTTKREYLKQQGITVGVRGRFSGAAKVAIAEALSKGVTFTDPQPITKKAK*
Ga0007791_100012443F011299GAGGMMTRKHFEAIAEILKFASDKTHPALFSKMVNDFALMCARENPNFDVNKFHEASGYHVPNFSSR*
Ga0007791_100012447F002071AGGAMDTLEIGQTYTTSNSGVTGTIKAVDNHPSGVNRILLDVNGKERWTSAPAI*
Ga0007791_100012449F005177AGGAMRYRVEIYDDIKANDLTIQSPTLVDKEYLTELVFSNLNKFSGNVKAFVYDNVKKKKVTALVLPYETVSKINNKRAQLTNVMV*
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