NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007794_10070715

Scaffold Ga0007794_10070715


Overview

Basic Information
Taxon OID3300004774 Open in IMG/M
Scaffold IDGa0007794_10070715 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1039
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012867Metagenome276Y
F014736Metagenome260Y
F050374Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0007794_100707152F050374AGTAGMKSMIDYKFIGWNNKDGADKVWGAIYIEDRTNSRPKVLIFWGRRGKKLQTKLDCEGWDLDKLVRSKIEKGYKTIYDYQLDNVYPEFLSDLEKTTMWALLKL*
Ga0007794_100707153F012867GGAGMMKDFMYEQQRESITEDWGDEISQPLLSEKLNVPRVSYRIYYSNDNLTRRIFIFRGNCTPVVTEIMLGLGFIFAKDGDTENIPDQLVEV*
Ga0007794_100707154F014736GGAGMNTPIVPDNVIKMWNDPHFQLLAEVDKLLTGSRVWKGTEWNYHPISPVKYRPVAEKVRQALDDLKLEYGVEE*
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