NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007827_10141301

Scaffold Ga0007827_10141301


Overview

Basic Information
Taxon OID3300004777 Open in IMG/M
Scaffold IDGa0007827_10141301 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)536
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006134Metagenome / Metatranscriptome380N
F098642Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0007827_101413012F098642N/AMGEAIFQKEGVKVKIPITTNKVKITTSAKKIIPKMTLKVKPMTSQ*
Ga0007827_101413013F006134N/ASVYPFQITDLLEYEARQKHSQNKILGEKVAKILHQNTDFSDEIAINSQTPSEKLKKDPIMALVTKTVSTYMLVKHSKNAKELSKEQNLSPWGKPFFKKKE*

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