NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068459_100411

Scaffold Ga0068459_100411


Overview

Basic Information
Taxon OID3300004791 Open in IMG/M
Scaffold IDGa0068459_100411 Open in IMG/M
Source Dataset NamePorphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterHudsonAlpha Institute for Biotechnology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29956
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (74.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Porphyra Umbilicalis → Porphyra Umbilicalis Symbiont Microbial Communities From The Coast Of Maine, Usa, In Atlantic Ocean

Source Dataset Sampling Location
Location NameTrenton, Maine, United States
CoordinatesLat. (o)44.4Long. (o)-68.4Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023776Metagenome208Y
F027092Metagenome195N
F061493Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0068459_10041122F061493GGAMPGRILSRPKGIRPRVAPLPKGVSGQNVVAILTGSNYQVASRFWLDAGRELALRVIVDTGSCVSLVREALLPPEMEVAPLDAATATLLDVNGGLLPITGTVTLTVCVGTYSTPVTCLVVPGIPTRRDRPHGRSCPQHLRAQGVHPVTKRM*
Ga0068459_10041127F023776GAGVIRSDKEPFPVEKLPQLEDSPHDAEAFALRCGKFLHCSSESSDPISHRMQQFARFLLEEGTTKFFGACYNVNDEPPIGL*
Ga0068459_10041128F027092GGAGGLTAGMPSPSPFDKTNCALDYDSPLGFAVILSSRWGKAGLWVDFRGSSFDGPS*
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