NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068459_100502

Scaffold Ga0068459_100502


Overview

Basic Information
Taxon OID3300004791 Open in IMG/M
Scaffold IDGa0068459_100502 Open in IMG/M
Source Dataset NamePorphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterHudsonAlpha Institute for Biotechnology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24546
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Porphyra Umbilicalis → Porphyra Umbilicalis Symbiont Microbial Communities From The Coast Of Maine, Usa, In Atlantic Ocean

Source Dataset Sampling Location
Location NameTrenton, Maine, United States
CoordinatesLat. (o)44.4Long. (o)-68.4Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036067Metagenome170Y
F051654Metagenome143Y
F062401Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0068459_10050222F036067GGAMRWRLRLSEYTFDRVYKPGASHHLPDFLSRASTVAPPEDIHDDITCLVLAETAKGLRTGRYTGTDTPEPVEFDDVVEAQQTGDTCVEMSTRVERGAAKAFFRNEHHALYRRTPYGNQLDIPKS*
Ga0068459_10050226F051654N/AMCVRWSYRPALDTSAGVNIVRTSVLPANWMACAEELTTLPRIQDANNNLLVTKYAIYLYVDTGGVRLFDQFLVFDNLSVPCILGTEFIDHNIEAILPLLRKIVWQEHVRCTEELPRPTPILDCVNDSASDRHWQGKPARVRACKQVHADGQQEEWMMATCDTPGMVTITPNARLCRHKSMAVARGLAIVKPDESFLVKLFNFGKDQVIFRKNSMWGLRNLSKGLCWPPS*
Ga0068459_10050237F062401N/AMTRNFADDRQLALRHVPWLNREYGPYTYVWPKHAQATLIGAIPSVQVLPNVFLVPPVQHLDSILLRLVTTTEEATVVIRQWANTSWYATAIRACFEYQVHLSTDARDTNPPSWAMRACHFLHRYDD*
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