NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068459_101451

Scaffold Ga0068459_101451


Overview

Basic Information
Taxon OID3300004791 Open in IMG/M
Scaffold IDGa0068459_101451 Open in IMG/M
Source Dataset NamePorphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterHudsonAlpha Institute for Biotechnology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13887
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Porphyra Umbilicalis → Porphyra Umbilicalis Symbiont Microbial Communities From The Coast Of Maine, Usa, In Atlantic Ocean

Source Dataset Sampling Location
Location NameTrenton, Maine, United States
CoordinatesLat. (o)44.4Long. (o)-68.4Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006930Metagenome361Y
F039926Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0068459_10145115F006930GGAMVHLQDVVKLHTFVLGDLGALLLACFGFDLRFALVAFDLVGNSNWCEGVGVAVGAEKENTWAGGDYLRGALGWERRANLRTTNKARSHTHT*
Ga0068459_1014512F006930GGAVTLMVPHMVHLQDVVKLHTFVLGDLGALLLACFGFDLRFALVAFDLVGDSIWCEGVGVGVGARGGXTWAXGTI*
Ga0068459_1014514F039926N/AMVPHMVHLQDVVKLHTFVLGDLGALLLACFGVDLRFALVAFDLVSDSIWCEGVGVGVGARGGSTWAGGDYLRGALGWERRANLRTTNKARSHTHTQAQATQPLHRGPPPLIPTAFQQPVRAYQATSFANRFCV*
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