NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0068459_101966

Scaffold Ga0068459_101966


Overview

Basic Information
Taxon OID3300004791 Open in IMG/M
Scaffold IDGa0068459_101966 Open in IMG/M
Source Dataset NamePorphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterHudsonAlpha Institute for Biotechnology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10911
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Porphyra Umbilicalis → Porphyra Umbilicalis Symbiont Microbial Communities From The Coast Of Maine, Usa, In Atlantic Ocean

Source Dataset Sampling Location
Location NameTrenton, Maine, United States
CoordinatesLat. (o)44.4Long. (o)-68.4Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048070Metagenome148Y
F060562Metagenome132Y
F073006Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0068459_10196610F060562N/AMAYAEKLTTIPRIRDAKNKRLVTKNATHLYVDTGGVRFFDCFLVPDNLSVPCILGIEFIEQNIEAILPRLLQIVWQEHVRCTEKLPRPTPILACLNGSAWDRHWQDKPVRVRAYKQVRVNGNKKEWIMATCDTPGMVTITQSTWLCSHKSMAVARGFATVKPDEPFLVKLCNFGKDQVIVLKTSTLSFAEPYQGPMLSAVLYDKRPKDGTDTSLADTSRDLLEDLDLSEAPEYLHKQIRDMLQTQSSMWDGTLGVIRATEHAIATAPDALPIRA*
Ga0068459_10196612F073006GGAMLQIINVLVMHVQMPWADNVSKVLSVVGEPCALLQVQGSPGFAEAVQNRVNVFDVLFRARGEDDNIV*
Ga0068459_10196616F048070AGGMVHGVGFVFLASVDKSTWYSKHARMAVAYQLVLVNCGMTTVASPVVVTRRLRIESKCGTSGTKNPLGSTGTKESVPISVACADLGLTCL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.