NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068459_102869

Scaffold Ga0068459_102869


Overview

Basic Information
Taxon OID3300004791 Open in IMG/M
Scaffold IDGa0068459_102869 Open in IMG/M
Source Dataset NamePorphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterHudsonAlpha Institute for Biotechnology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8462
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Porphyra Umbilicalis → Porphyra Umbilicalis Symbiont Microbial Communities From The Coast Of Maine, Usa, In Atlantic Ocean

Source Dataset Sampling Location
Location NameTrenton, Maine, United States
CoordinatesLat. (o)44.4Long. (o)-68.4Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F024709Metagenome204Y
F048070Metagenome148Y
F100271Metagenome102Y
F104363Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0068459_10286912F100271N/AMAVARGLAIVKFDEPFLVKLCRFRKDQVIVRKNATLGFAEPYQGPMLSAVLDNNNAKDETDTSSDDASGDPLEDLDFSKAPEYLHKQIRDMLKTHSSM*
Ga0068459_1028693F024709GGCGGVAHAWVDQLTGLRRPVEQADGPGVKWAFAIIGKAVPCAVDGEANNERFSQHLDAFEPEQVAAPTRFNAQSVLGRRAHADGGPPGGAPPSARNTRARSLSHESGPSVGSRHTCRRDSRRSDEQDE*
Ga0068459_1028694F048070AGGMAQGVGFVSLASVDKSASYSKHARIAVAYQLLLVHCGMATVPASVVVTKRRRTESKCCTGGGRNPLGSTGTEGSLPISVAGADFGREYVYGP*
Ga0068459_1028695F104363GAGGMDKSVTSNMDMLDSGYPRGIRDNVGHGCEHGLSATSSRWRLPFLPWYVLVLLPEKAHHQVACEIFQGFPGVVVRPVVEPAHLSAIAVASLA*
Ga0068459_1028696F013269AGCAGGVSVVVGRVAEVNVDMVFLAVNVNDKCGGIRVCVDDHEGFNGFALQLVLPIVVCRVYIVADLDVRIAGFDPMVELTIVTLLRLTQGLDYDGDLLAQAGHELAFLS*
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