Scaffold Ga0068459_105764

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068459_105764

Scaffold Ga0068459_105764

Overview

Basic Information
Taxon OID	3300004791 Open in IMG/M
Scaffold ID	Ga0068459_105764 Open in IMG/M
Source Dataset Name	Porphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	HudsonAlpha Institute for Biotechnology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3918
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Porphyra Umbilicalis → Porphyra Umbilicalis Symbiont Microbial Communities From The Coast Of Maine, Usa, In Atlantic Ocean

Source Dataset Sampling Location
Location Name	Trenton, Maine, United States
Coordinates	Lat. (^o)	44.4	Long. (^o)	-68.4	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024709	Metagenome	204	Y
F048070	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068459_1057645	F024709	GGTGG	VTGLRRAVERVDGHGVESDLAIIGQAVARAVDGDANYERFAQHLEAVQPEEAVAPTRFNAQSVVGRHAHVDGGPSGGASPSPRNTCARSVSQESSASVGSRHLCRRDSRHSDEEEEE*
Ga0068459_1057646	F048070	AGG	MAHGVGIVSLASVDKITSYSKHARMAVAYQLVFVHFGMTTVASSVEATRRRRIESKCCTSGTRNPLGSTDTEGSASISVARVDFGHTSVYGP*

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