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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300004791 Open in IMG/M |
| Scaffold ID | Ga0068459_109088 Open in IMG/M |
| Source Dataset Name | Porphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | HudsonAlpha Institute for Biotechnology |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2258 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Bivalvia → Autobranchia → Heteroconchia → Euheterodonta → Imparidentia → Neoheterodontei → Venerida → Veneroidea → Veneridae → Mercenaria → Mercenaria mercenaria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Porphyra Umbilicalis → Porphyra Umbilicalis Symbiont Microbial Communities From The Coast Of Maine, Usa, In Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trenton, Maine, United States | |||||||
| Coordinates | Lat. (o) | 44.4 | Long. (o) | -68.4 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F051654 | Metagenome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068459_1090883 | F051654 | N/A | MRSYRPVLDTGAGVNIVRRSTLPVNWMAYAKELTTLPRIRDANINRLVAKYAIHLFVDTGGVRLFDRFLVPDNWSVPCILGTEFVERNIQAILQRLRKIVWQKHVRCTKNLSRPTLILACLNDSAWDRHWHNKPARVRACNQVRVNGQKEEWIMATCDTPGMETITPNARLCRHKSMAVARGLAIVKPNEPYLVKLCNFGKDQVIVRKNSTFGFAEPYQGPM* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |