NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007764_11300229

Scaffold Ga0007764_11300229


Overview

Basic Information
Taxon OID3300004797 Open in IMG/M
Scaffold IDGa0007764_11300229 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)960
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057318Metagenome / Metatranscriptome136Y
F079990Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0007764_113002291F057318GGAGGVAKEAKNNFQVSGTGGAGTSGQPARYAAGIDNAEDFYEMQTAAKMQGQNPAFSNVPSPSSQRPFRGDSAQKLVPLNAPTQRPDEDVRTGGSMNTEAMYANDATATGEDADRMRAALPYLSVMAELPQTSNAFRNYVRYLKSVL*VLAKRLVMQPRNYQEMDLPQ
Ga0007764_113002292F079990GGAGGMKKKSLSGGKKPKNQGSAGKAPTQKPMLAKKASSKGGKTYFSSNPSGTRGSRSK*
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