NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058863_11740927

Scaffold Ga0058863_11740927


Overview

Basic Information
Taxon OID3300004799 Open in IMG/M
Scaffold IDGa0058863_11740927 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1031
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Switchgrass Rhizosphere And Bulk Soil Microbial Communities From Kellogg Biological Station, Michigan, Usa For Expression Studies

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3912Long. (o)-85.383786Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001384Metagenome / Metatranscriptome709Y

Sequences

Protein IDFamilyRBSSequence
Ga0058863_117409271F001384AGGAGGMSDIRGAGKPITYSDNNPISGWVDDFRKQREKLKREPANDEERILLARWLAYRGRGELESIVGAACYAYTHFASEIDSEWRLLLADHIRTEAGHGWGYIQQGNALDPSYDHAAPDPEFAEQYGLKRNQAHWDLQTRDFLSFLIAGNLWPYGHCTAASIQSILITTPKVLDFEERVVQAEERGHHDAALQKLHDYVWEQIDRYGETYIKKRVAEIDAAALNAGSRICFDPPRRDFLIKYFGAPVENASRFYDWRRYLYENVLGWEPEPVKIKAWPAGVDEPAQL
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