NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007801_10027392

Scaffold Ga0007801_10027392


Overview

Basic Information
Taxon OID3300004802 Open in IMG/M
Scaffold IDGa0007801_10027392 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1729
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016117Metagenome / Metatranscriptome249N
F024248Metagenome / Metatranscriptome206N
F073067Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0007801_100273921F073067N/AMEPAVRVAPTPTHPGVNERLPRVDHLPRSDEAIVPEQLPGVEPLAAGACINPCLERTGVFGKTLSSFSSSLTDASMLLF*
Ga0007801_100273922F024248N/AMLLCCFSKNSDYCLCSILKFSYPPFSVEYGSFPRVPIGLFCCGRGHQHPPAQVVPTSTLSLSPRPLQAVDPALIARSFALPIIQSMYQAPAIRPPLLRQDALRPSTPEVQVVPLSDLDVQADEAGRVVSPRPSTSAAAANGSLFLW*
Ga0007801_100273923F016117N/AMDSIHIELSPRLGLLIAAWKNFFTKLHAQSVLTDNGLQYLLALLVDKLQEAIDSEFHPLVLNWLKETLPKVLNCRGTVSLINQVPAHLWTSNHIFRHDYFVCLERRANRLSIPS*
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