NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007854_10000026

Scaffold Ga0007854_10000026


Overview

Basic Information
Taxon OID3300004806 Open in IMG/M
Scaffold IDGa0007854_10000026 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)117202
Total Scaffold Genes150 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (35.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071952Metagenome121N
F080872Metagenome114N
F098672Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0007854_10000026144F080872N/AMSGVKIQKVDHVEPEAKRPVHHKSMRTYPRGAMKGTRSRGGGGIVPVKDPARPPPVRKGTLRILTKKGAEARRKTIKKTVSEMNDGVVRASLKKSNININPKTPANIAREILEGGMEAGMIVVK*
Ga0007854_1000002625F071952N/AMFQRMKASYRLSPLARKGSPISDPCQVPQYSGTPGWIYLTHDSNGNAHAYFTNAKGERPESLALVMDERLCCDTIFRVIRLAPKMYVLYDVLVLNGTRIHETLSFADRQAKIAELLELFHFPDLVALMPIANAPVGTHVRGYEQYDSVPGTIGVYLPSVE*
Ga0007854_1000002675F098672N/AMPAKKGGGFLETMVASGVGAYAAKNSSSMKGLLWTLGKYVLVIVVVSFLIMFVLGLMSTEHFVPVTPSKTGDEKLTTSAGNVILH*

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