NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068515_100840

Scaffold Ga0068515_100840


Overview

Basic Information
Taxon OID3300004829 Open in IMG/M
Scaffold IDGa0068515_100840 Open in IMG/M
Source Dataset NameMarine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4005
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameSouth Korea: Pohang-si, Gyeongsangbuk-do
CoordinatesLat. (o)36.03776Long. (o)129.386Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002399Metagenome / Metatranscriptome563Y
F022856Metagenome212Y
F035770Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0068515_1008402F022856N/AMTNFKQIVGNFRDILGNERDKLYPQMPNTRVGDAHISIHIHMYKRANPLRGFDSLGGSARTL*
Ga0068515_1008405F035770N/AMAEYQYVCHLRDNGHTSEIIYPNKDTSKQHTDGSWLLLTITGERLGTVSPNGTVRLT*
Ga0068515_1008409F002399GAGGMSIEIPKTRTHKSVIGQLRKKYGLKDNTPVHKVEQIMTPKDWQAFSEALTFPNGKPSQRGK*
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