NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068515_101908

Scaffold Ga0068515_101908


Overview

Basic Information
Taxon OID3300004829 Open in IMG/M
Scaffold IDGa0068515_101908 Open in IMG/M
Source Dataset NameMarine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2686
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → Candidatus Poseidoniaceae → Candidatus Poseidonia → unclassified Candidatus Poseidonia → Candidatus Poseidonia sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameSouth Korea: Pohang-si, Gyeongsangbuk-do
CoordinatesLat. (o)36.03776Long. (o)129.386Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050347Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0068515_1019084F050347N/AMGKIFSKTATDDQWDGNTLTDTLSGQQVGILMPNTSINRVQLQYAGGSCAWRIQNAQSLVFNRFGFGMADGYACYESSAIAPYTINPNDILTVYPLPLAGAGTTNVLSWIQTSKGVELFEAKAVADATATEMKTVVNEQTLGDSMFNSTLGSIHIQAQDGATVDEVSIIDNSGGTVLTLYGGVRGASGGAMSLVYNLKADGLAVPIGKGFSIKVTTTAA*
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