NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068515_103560

Scaffold Ga0068515_103560


Overview

Basic Information
Taxon OID3300004829 Open in IMG/M
Scaffold IDGa0068515_103560 Open in IMG/M
Source Dataset NameMarine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2001
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameSouth Korea: Pohang-si, Gyeongsangbuk-do
CoordinatesLat. (o)36.03776Long. (o)129.386Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082548Metagenome113Y
F088835Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0068515_1035602F082548GAGMRSCRLVAADMVKAMDAAAKEVWDSEPKKKSDEKLKALVFAHVCNSYARRGRYGESETSG
Ga0068515_1035604F088835AGGMMKEIEPWEYIVANQLNFLSGNVVELLTEYARTKDIQLLEEACRELGALTARERYLERSCDADDSD*

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