Scaffold Ga0068515_116343

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068515_116343

Scaffold Ga0068515_116343

Overview

Basic Information
Taxon OID	3300004829 Open in IMG/M
Scaffold ID	Ga0068515_116343 Open in IMG/M
Source Dataset Name	Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	928
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location Name	South Korea: Pohang-si, Gyeongsangbuk-do
Coordinates	Lat. (^o)	36.03776	Long. (^o)	129.386	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039045	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068515_1163432	F039045	N/A	SGIEKDIKCGRARYQTYQTGMGGQSVLVVPDNAYIVIYGYDYSPAGGGIQQTGNSLPADEGSFVLMREQMRAFETQQISFYTGQAFHPFIHHFDADHVTTWGTNRPALSIKNTPLSRSTYIISNRSVAITVGLIQRIELNQAAAIPVTDKTPPSLTYGGDVQTPNVESVFSSNIANPPSFVQPSLKQFQDYGLGGVPGNAQDQAFALPDRIDGLIEPSQYLQDTFGLEFREAAACNYFLNVHYALYTQQEPESLG*

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