Scaffold Ga0069134_159764

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0069134_159764

Scaffold Ga0069134_159764

Overview

Basic Information
Taxon OID	3300004831 Open in IMG/M
Scaffold ID	Ga0069134_159764 Open in IMG/M
Source Dataset Name	Marine surface microbial communities from the North Atlantic Ocean - filtered matter
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	621
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → Alcanivorax nanhaiticus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Surface Seawater → Marine Surface Microbial Communities From The North Atlantic Ocean, Enriched With Methanesulfonate

Source Dataset Sampling Location
Location Name	Leca da Palmeira, Matosinhos
Coordinates	Lat. (^o)	41.226956	Long. (^o)	-8.720528	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006384	Metagenome	374	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0069134_1597641	F006384	AGGA	MSYPKDFKLGKGDREFADANNKGLVVRYSDAVVKLCHWYKESDNAIWDSKFGDKQHNGMTYVYVEFAYGWSCIAELEFDCHADGWWYDSYFFNSYKEISSFWQSELGIDLFYAEEDAKRKEMDSLINAHICEMSEGMMSLSHVG*

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