Scaffold Ga0071103_173995

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0071103_173995

Scaffold Ga0071103_173995

Overview

Basic Information
Taxon OID	3300004870 Open in IMG/M
Scaffold ID	Ga0071103_173995 Open in IMG/M
Source Dataset Name	Mid-Atlantic Ridge North Pond Expedition - Sample Bottom Water CTD 2012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	501
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location
Location Name	North Pond, Atlantic Ocean
Coordinates	Lat. (^o)	22.78	Long. (^o)	-46.09	Alt. (m)		Depth (m)	4350
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F009404	Metagenome / Metatranscriptome	318	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071103_1739951	F005148	GGAG	MKQKKYEEFLKRKLPESEEVMCKKCERKYYDEWNLLSLQSLDLCLLCANRNLDKQTIKEKYYHE*
Ga0071103_1739952	F009404	GAG	MSDEPETIQPKGEALVKHCPICGVEFDETVLTNRWLKCDSCETVFQVKVKTGE*

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