NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068517_1035419

Scaffold Ga0068517_1035419


Overview

Basic Information
Taxon OID3300004901 Open in IMG/M
Scaffold IDGa0068517_1035419 Open in IMG/M
Source Dataset NameWastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-EVs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)512
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium ADurb.Bin331(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameNanji, South Korea
CoordinatesLat. (o)37.3132Long. (o)126.828Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058997Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0068517_10354191F058997N/AEGIMIIYKGREMTVREACKLMGIDCDDFMAWCKKFALQNYGYAMNYYKRTLKFKKG*
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