NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068513_1021220

Scaffold Ga0068513_1021220


Overview

Basic Information
Taxon OID3300004951 Open in IMG/M
Scaffold IDGa0068513_1021220 Open in IMG/M
Source Dataset NameMarine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)697
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameEast Sea, Korea
CoordinatesLat. (o)37.0Long. (o)131.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012639Metagenome / Metatranscriptome279Y
F015413Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0068513_10212201F012639AGGGGGMSANNSGIVLTCSAAFAAAAPVATVISATMQTSPTVTAVTELQVPLTENWIATDVYILGAAGAGTPTVIDPVVSMDKNRGRQLVQTPPLSSMLITNNTRPRFSPQPIGFEGGSIIRMFAT
Ga0068513_10212202F015413N/AEQLLPKGILGKDMLIGSAGTALSVQMGNIVGKFLPIGQLPTGTSSILAGILLQKFMGRNPMLKKLSEGIIQGGIATAMTPFTSGLIPQQFSQERKEVVTEELNPMVKGVMW*
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