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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005044 Open in IMG/M |
| Scaffold ID | Ga0071351_1000176 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 41021 |
| Total Scaffold Genes | 57 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (26.32%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.236 | Alt. (m) | Depth (m) | 2.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011134 | Metagenome / Metatranscriptome | 294 | N |
| F019779 | Metagenome / Metatranscriptome | 227 | N |
| F022586 | Metagenome / Metatranscriptome | 213 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0071351_100017610 | F011134 | N/A | MSASKHEETDNFKETLVDTIKINLVYQFKIRIDETNTEVVVINDSNIEQYEKLNEILVNIRRLDPSWSINSNSNKPWSFKYMLENNLRLRILEIDITDLDTLDMDGYENLHDSLRDLRLEDPGWSINNTRRDFPILLTPTDIGLINNHLKFSETRIN* |
| Ga0071351_100017626 | F019779 | N/A | MNNSPVINFGLIDSEEEEIINEILDSSDLPNTIECSGERCFTPPEDDWDIISRGSDFIMLELETLDEQLDLIATHIDTENDTENILQDIRKGFSIIDNIILYATTFINEANKAKVEKFKGFYRDILDFAKTNISKTLTIIRKLRARSLLSLVPLTKDLLIEQDHIKKLVHGNNLEQIKELLKEYRRTIRRRISRRYSI* |
| Ga0071351_100017657 | F022586 | N/A | KSSISPNSFYEIIHEDGDLISYEQEKLGKILDNIILEIKPILKSEEMVEKIQKAVEVTEDIISTTYRFIEDATLAEEGLFIGFHEDLQKDARKSVVKTLDIAVKFRENNSLSLVPVIRDLTTRIEWIEFILSKTSIEQMKNALEYRKAVMIVNRQTDRTHTNSV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |