NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071351_1017389

Scaffold Ga0071351_1017389


Overview

Basic Information
Taxon OID3300005044 Open in IMG/M
Scaffold IDGa0071351_1017389 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1659
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.236Alt. (m)Depth (m)2.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023520Metagenome / Metatranscriptome209N
F024962Metagenome / Metatranscriptome203N
F028416Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0071351_10173891F028416GAGMNEQPVNGHAIVNRLERHPNVFRLRRTWLKVAGETLDLLNLIDVTQSNTAADNTLVFGAIYDKVKQLKRIDPDKLVNQDTMVQATVIKYDCPNCLPTDNIYLADYELDC*
Ga0071351_10173892F023520N/AMATTREGKYVKCCDAKSRDKRIESIDDLLSAINLIFIQNMFEKGEDDTALLRHLYKAKLKALSIKPELTLVNETHLLINKILEGVDGIDTSKEWNCLDNKYKFVEIKQAMTELKLCYPLWKLNRYDIEKYSTCLCSNCDSIDVAGGKTLEKLGELTLEL*
Ga0071351_10173893F024962AGGAMKILRSIIKEQVENKIDPILKEKYRENIALKLFRASIEIIRESVDRLTEMYYFDYPQHEKEDFVKEVELHVFEWKSKVQERSAENITGLDHLLSSKIIDTLEEYLEALEETDIDERQRKLYYVDSFAAVWNHRKIEDIIRHPWSVELCRRNNWVAEMPKDN*
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