Scaffold Ga0071328_115992

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0071328_115992

Scaffold Ga0071328_115992

Overview

Basic Information
Taxon OID	3300005045 Open in IMG/M
Scaffold ID	Ga0071328_115992 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Chicago
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2030
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Fox Tunnel, Fairbanks, Alaska, Usa

Source Dataset Sampling Location
Location Name	Fairbanks, Alaska, USA
Coordinates	Lat. (^o)	64.953	Long. (^o)	-147.615	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000573	Metagenome / Metatranscriptome	1016	Y
F034366	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071328_1159923	F034366	GGAGG	MTIGVGNLVAVICIVISQATNALWWALLAIFAVLWWGARAPWGSS*
Ga0071328_1159924	F000573	GAGG	VLAWLRRIIVSIGIGGASYAIMLTFMVLSVVYDRQLEPVITFAFDTGRWIIAVLDSWVAGSRWGQVAVNHLRERVNMTHVVLSIPAIIIATLFVGIPLNKLLGGTRSALQRMAIAVVSVPATVILAVALFTFNAFVPETYAALLRFADWIWQASLNALSSYGDAVPGARKLTNVARQGFSGHHYVIMALCSALAAFLVNALFALASKPQTRSPPCSEDGQAAPVGFDD*

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