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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005045 Open in IMG/M |
| Scaffold ID | Ga0071328_121875 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Chicago |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2906 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Fox Tunnel, Fairbanks, Alaska, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Fairbanks, Alaska, USA | |||||||
| Coordinates | Lat. (o) | 64.953 | Long. (o) | -147.615 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000573 | Metagenome / Metatranscriptome | 1016 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0071328_1218753 | F000573 | GGA | VLAWLRRIIVSFGVGGTSYALMLAFMVASVVYDRELEPVVTFAFETGRQITDLLESWVSGNYWGQIAVNHLRERVNMTHVVLSIPAIVLAVIPVGIPLNRFLGGTRSALQRLAIAFVSIPATLVLAVALFTFNALVPETYAALLRFADSIWQASLNALSAWGDSVPGARKLTNVARQGFSGHHFVIMALCSLVAAFLVNALFASGRTSSIELEPPSSGEK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |