NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070767_1380042

Scaffold Ga0070767_1380042


Overview

Basic Information
Taxon OID3300005067 Open in IMG/M
Scaffold IDGa0070767_1380042 Open in IMG/M
Source Dataset NameMicrobial Community from Halfdan Field MHDA5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterShell Corporation
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location NameNorth Sea, Denmark
CoordinatesLat. (o)55.49Long. (o)7.42Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079441Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0070767_13800421F079441N/ALTAIQLEAVYGLGAMRLESYELVEQLKTLNENIRTLNSTLKDWANITNRLDEQIRLLETQRYSSKYWQFEPIEHYDLETLQPGEVTNLLSTTERGAFVLFGSFTTSDKVYWEVRADDLVIKGTVEDLYNYGLIGYNPRTLWISAGNGGYAVWATPNPYIEYRDKIQ
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