NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071350_1000039

Scaffold Ga0071350_1000039


Overview

Basic Information
Taxon OID3300005069 Open in IMG/M
Scaffold IDGa0071350_1000039 Open in IMG/M
Source Dataset NameMetagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18683
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (85.71%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Associated Families10

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.611214Long. (o)163.119356Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000868Metagenome / Metatranscriptome853Y
F004431Metagenome / Metatranscriptome438Y
F004840Metagenome / Metatranscriptome421Y
F013184Metagenome / Metatranscriptome273Y
F015600Metagenome / Metatranscriptome253Y
F017133Metagenome / Metatranscriptome242Y
F021288Metagenome / Metatranscriptome219Y
F063685Metagenome / Metatranscriptome129Y
F080046Metagenome / Metatranscriptome115Y
F103145Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0071350_100003911F004431AGAAGMTITYSLWDGAQLLGVDFKASSADEMNKAVAELQKVSKNVVAHMRKVEQN*
Ga0071350_100003912F063685AGGMTIELDNYGFMLDTEWCYIALSWQLLITAGVIFAGYKAYKKWKTTNDN*
Ga0071350_100003915F103145AGGAGMLSENTLNKIVFEYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECVK*
Ga0071350_100003916F080046GAGMSLSLANKIAKDKFFLPPSKYTNHKVVEIVSLNEESGIATVILEKYTIGRNANVYKNNNVFTIELPYSEFQNLNGWSK*
Ga0071350_100003926F004840AGGAGMDYEYLVSCQYDYEESPHWKQRYESEFDAWKSFFSFTDWGLANEYSTVNIYTHTGKCYTKIFYRDGRVVTR*
Ga0071350_100003939F013184GAGGMAELKDYAFVIKLAGSVSAKNEKEAWNKINSHVDDLGDVESLKYDLSWPDVSWELEYEL*
Ga0071350_100003944F000868AGGCGGVSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQLYADWCFADMAESNYLKGRFNQFYDLKPGDQYYIEWDEEK*
Ga0071350_100003945F021288GAGGMLGYTQRDLADMTYGVYQADLLINADENPAIHNYLVTAHDFLQGLWAEGYFDNGAE*
Ga0071350_100003947F015600GGAMDTTALPPHLQKMIDAGVSGTDILHGELKSLMLIAEQQYQEISQEEEESDFSDAMISMDRTRAEGRLDAFGEVYALTYQLAFAISERTKARG*
Ga0071350_10000399F017133AGGAMNSLYEKFATVSDYPRGLMNLCPCGQVVLAPAQYHEGFPWWENPNKCKEMWETSH*
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