NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071116_1034165

Scaffold Ga0071116_1034165


Overview

Basic Information
Taxon OID3300005077 Open in IMG/M
Scaffold IDGa0071116_1034165 Open in IMG/M
Source Dataset NameWater filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterPennsylvania State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3486
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole → Water Filled Karst Sinkhole Microbial Communities From Little Salt Spring, North Port, Florida

Source Dataset Sampling Location
Location NameNorth Port, Florida
CoordinatesLat. (o)27.074722Long. (o)-82.233333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003659Metagenome / Metatranscriptome474Y
F005775Metagenome390N
F036110Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0071116_10341651F005775GGAMKKQKPVYTKAQHQIITPAYVQKKIQLYKNVKWTTKDGRDLFLMVSQSVTSYVPGSDHNNQMPMGFTNIQMGHYNKISIHSRDFAQMADVFQEIANFMRANSSKIDKVLSSELDKYQTHHLKTLLKDDSNP*
Ga0071116_10341653F036110AGGMTEWIFFGATVLVSVTGFLISRELSRVSDELKHLRQDVFRLSVDLAKLEERLDSII*
Ga0071116_10341656F003659AGAAGMTAADVLGRYLIAREDVPVYDLPNGTRIGEIKKGNSTAEVYSYVVRNGQVWWMFDYTIPGQQPGAYYVMQKDGRFSLSTAPGNVAVSPNVLPGIDVLPDTKNLLIYGALGLAALLIITRR
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