NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072335_10503045

Scaffold Ga0072335_10503045


Overview

Basic Information
Taxon OID3300005081 Open in IMG/M
Scaffold IDGa0072335_10503045 Open in IMG/M
Source Dataset NameMicrobial Community from Halfdan Field MHBB9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterShell Corporation
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location NameNorth Sea, Denmark
CoordinatesLat. (o)55.49Long. (o)7.42Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036998Metagenome168N

Sequences

Protein IDFamilyRBSSequence
Ga0072335_105030452F036998N/AVKYGRKSKISCDASATANSTITITYTLGLPAAYAMLVAVKPDGTLETVAEPGSLEAGEGKTVTYKVSSTGTYQFFIADSRVLVEGDSAPQNYQLITCWMPDYATGTAKAAFCVVS*
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