NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072683_101178

Scaffold Ga0072683_101178


Overview

Basic Information
Taxon OID3300005098 Open in IMG/M
Scaffold IDGa0072683_101178 Open in IMG/M
Source Dataset NameHydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7912
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location NameGuaymas Basin
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F011723Metagenome287Y
F028993Metagenome189N
F091133Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0072683_10117811F009582AGGAGGMVARRGRREFIGGTGREVKEARVDVVLQRLEENIGSELKVYPSHVYRYGVNNIFQRTFAYLLGWQMSGEPIKLTATRTGLLKVAVSGGGFEEVDTLTGVATAEWSDVLEFAFVPFRIRFEAIDYPYCAMFSIDGVKWSDAVYVDGETPRDFDVNAKYIKVRRYGGTDAKYWVIAMR*
Ga0072683_10117812F011723GAGGMVIYNKGLGRDNSTDEGKEIFSLTSKVEEKYKVRRIVITDVLTNPLIMEIWVERDRIGENIPLEVGSDFAPERVIDVDAEIPVGHTFSIKIKPQASGNQGSVRGWVEYEIVS*
Ga0072683_10117814F028993GAGGVEMADIVEKAVKKRSERIAVSEAYYRDGVEHPTKDWLEEFKKAKDRRNAGLRRAMDEGLFEIGAERVGTDGWQRATLAKADRWLSGATSEEANEKYEEAMRDVAECIERARKAVEGMPTTTVEQRAEKSKRFQIEMAKCMEEKRKRR*
Ga0072683_1011788F091133GGAGGMGIFDVWDTWADWLSDWWDAFMDKIDSVKAELWEWVDNIAKYWVARANEWFDILNHTWIEVTNLFDEAKRYAGSLFEDVKNYAVDLMEEAKSYADDIVTDAILKIDNWIATFGETVAELWDKLEPYVSAVITPLETAVDNIQNVKIPSLEDITNALKESVDNILNTDIPFLNQSISDLWNEASEIWNEIWNNIWISLNNAWTDINNLWNTISEIPADVWNAITAGWDGFTDFLFEQGQRFVEKLLDVEVGLDDVVEELKRKYGGGGA*
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