NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072683_104023

Scaffold Ga0072683_104023


Overview

Basic Information
Taxon OID3300005098 Open in IMG/M
Scaffold IDGa0072683_104023 Open in IMG/M
Source Dataset NameHydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5630
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location NameGuaymas Basin
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007460Metagenome350N
F015290Metagenome255N
F017081Metagenome242Y
F055335Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0072683_1040232F017081GGAGMWKGRWWKGICILGILTLLVATAQAIDIAEIAATETQIKITIANATSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKPNSTYYVKVCDSENCSDIVSVSVSEKEQLMSQNFTSQFNTLTQGGNFLNISKLGEVIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGLITGSVLIVMLPPSAQHIAYILLVISIAGTLYTIIKARR*
Ga0072683_1040233F055335AGGAGGMRAYDILLFLVCLEATIGFVSSLHIFPADYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALTMFLNMLIAIVAIYIPLTTVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME*
Ga0072683_1040235F007460AGGTGGMSDEEGIGIGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTSIVGVDETTPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHRYTYYQQGGEEEEW*
Ga0072683_1040236F015290AGGAGMLNNKGQAGEIAVFVILAFIVAFAYIFISPIVQNIKDVVPTVADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV*
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