NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072683_111212

Scaffold Ga0072683_111212


Overview

Basic Information
Taxon OID3300005098 Open in IMG/M
Scaffold IDGa0072683_111212 Open in IMG/M
Source Dataset NameHydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8888
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location NameGuaymas Basin
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055333Metagenome138Y
F098394Metagenome103N
F104193Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0072683_11121212F098394AGGAVLLAALGSFAALASFTLSLTIWLWRLRRNEIAHLYRRMEQIEKRIENIEKDLTEVRERVARLEESVRKR*
Ga0072683_1112123F104193AGTAGGMLEKLDRVLELLAERERTFDELKAETSLSDETLNLVIDFFVAHDFAERRNDHIRITESGRKLLEL*
Ga0072683_1112125F055333GGTGGMTEVMREGERGGEVASPAHEEGNAKESLQNVRAVKVMLPGRSTGMGAYTQHYLYSIRQRKLLEPHRTEYSRTGNHWDDIYFLLPGKYFLAIKDISNSGKHYCRYALLRVLTPEEYREKVKNDKYAMQNFDHYYRHYGYEIIDLPTERPPAEYVEPPCSCLSEENAEY*
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