Scaffold Ga0072683_119612

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0072683_119612

Scaffold Ga0072683_119612

Overview

Basic Information
Taxon OID	3300005098 Open in IMG/M
Scaffold ID	Ga0072683_119612 Open in IMG/M
Source Dataset Name	Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4028
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location Name	Guaymas Basin
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081982	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0072683_1196127	F081982	AGGAGG	MAENIFVGEFRVVHLDANDNAIADLLSMRSEQFGIVNGASGTEATYEKDLQKLPKIPKIDRDILRQDDKLVVRVKPDKDTDVDVDDEGQYILVPVTVRNVRTGVVYPKILAYVDFTDLIDADTTLKAGKWYNWLEYVIPAQTELKLGVTMPDVRTASALSLQWDCNITT*

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