NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072683_119840

Scaffold Ga0072683_119840


Overview

Basic Information
Taxon OID3300005098 Open in IMG/M
Scaffold IDGa0072683_119840 Open in IMG/M
Source Dataset NameHydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7982
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → unclassified Methanomicrobia → Methanomicrobia archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location NameGuaymas Basin
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029623Metagenome187Y
F035145Metagenome172Y
F042112Metagenome158N
F049343Metagenome146Y
F050065Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0072683_11984010F029623GAGMNSYVRVRFERGNLIVEISKDAFKDAETKKEATKELQQIIKTYFGIRFFIRLSIVYAFTALFCAFVALTIILMM*
Ga0072683_11984012F049343AGGAGGMEWSRLRDKLKRGEWYAFSAVCFLAGVVAGKGITTLGRAEPVLALTAVGAVLLAYWLALLTATIIAEIKEAPKTI*
Ga0072683_11984014F035145AGGAGMLEASSEFTRRGYNLKTVITEECCDLMRVEVICFTAKTSFPLLTLTYNKLTDNFILTIERKFITQHSTLKALIEALRSVEEVVRNDERRTERGDM*
Ga0072683_11984015F050065GAGVSDEVEKILLAIAYLEGLLRDAKRRGDEELVKYVGGIIRIYKERLQSQNSNN*
Ga0072683_1198403F042112GGAMTFDEYSSAFPQFEEKYVSKLAYPHLLFIQIQKIMDSIDAGGDGMEELENLKALLKSSWRAEIDMKTEECRKKMEKEIKRIAKVKERVGITTYREMKRAAKVRYVREYVQHVIEKLDEVGLLLIEEQTVLRGGGLMP*
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