Scaffold Ga0072682

Basic Information
Taxon OID	3300005099 Open in IMG/M
Scaffold ID	Ga0072682_102367 Open in IMG/M
Source Dataset Name	Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005099 Open in IMG/M

Scaffold ID

Ga0072682_102367 Open in IMG/M

Source Dataset Name

Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36349
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (55.10%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

36349

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (55.10%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location Name	Guaymas Basin
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Guaymas Basin

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F036512	Metagenome	169	N
F055334	Metagenome	138	N
F076704	Metagenome	117	N
F084956	Metagenome	111	N
F084957	Metagenome	111	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0072682_10236715	F036512	N/A	MINWKIPDYLKRKIRIQDILKNLFGHCDCGERLKQCEKDKAYCAKRIKSLSKTLTHSIILPEVTDHRKYVKEIKPWKIIRKLGNFDLVTADEIYYALPVNSWIKILKSIQPQVEKVLEKWRRDISDCDDFALVTASTVAASFAYDPFERQVAFAIAWSNTHAYDLFITTEGTCEIYEPQSNAVVGRLGKTSGIYETKKIWFMG*
Ga0072682_10236721	F084956	N/A	MRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQITTPDGWFTYFFPLVSGEIILNQPFTDDSAIITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQKAIIGKGNIISELECISRFDELAHRYLKEGDQQKYHGTLSEVIQQFISLTGMDITNKSSNDVDIVDLSFKYWELSLLDCLYRILGDKCMLYLNGNTLVIEDKSDEIKYTIDKNSKITNISVETSQEDSYRRCHVRGAKIGEDSAGNDIYIIGEAVDEMVTSNKEIYIEDDTVLTEWDARQRAEQELKTRNELTDAIEITLADLVYPVFGKVRVNLPGINKILELKSLRYTLDENGLYTTLYLGRSYKSLSTIFRSLK*
Ga0072682_10236725	F084957	AGG	MKLEDYKKKKIEKIKCPSGLEVTVNNITPYTLLKILDKLGISSTSEEIYSKPVIDELFKVFLQDPIIGKDIELDDLLREDYIFLHDLIFKRVTLPEE*
Ga0072682_10236728	F076704	AGGAGG	MPEYGAIKGWKNRIRIGLESCSNESIWHDGRNPLLNTFTMDTSVDIDKVFVIGSRDAVSMIEGVQEVTGTLERNLYSKNATYNEIIYAGNNSHLDLLTATGMYGEGLQSCKILMNTTSSSDSADYNRVIYGVKFHSYRTSVGAGDIVTESVDYDATNISTH*
Ga0072682_10236729	F055334	AGGA	MTSLIDKLNSVMDTLKNEIDSVLSGYKVMHFLRFPTASDYFPICLIVPIRITPLYRGGLLEDDEYSIIELEIHLITKVPYDYRGERLLKDLDAVMEKLRTLRHDESKWYELDYKGGVDLEYAPVEKWILQSAVIHVKVEA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0072682_102367

Overview

Ecosystem & Geography

Associated Families

Sequences