NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072682_110865

Scaffold Ga0072682_110865


Overview

Basic Information
Taxon OID3300005099 Open in IMG/M
Scaffold IDGa0072682_110865 Open in IMG/M
Source Dataset NameHydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8201
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location NameGuaymas Basin
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042112Metagenome158N
F091134Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0072682_11086515F091134N/ALFLAFVYLSCATAPSLLNFDFRKHADIIALAASYTVLVAFASQLPSAHGRYYECLIPFLLIPAFDKFARTRVKTTALCVLAYLFFTLPTLIHADLVNASLTLPITLSTVLTPLTVFAIAFALLYAYILMKSEKKRGAVAFSLLTLILIGSSAANLYNMHKISTQERECVVFNFLKQHSGEGIVFLADMREWWANYCLCCFYAQNFLPLKIFSNTTKYLITEKAGLDEGQKHIARLEGCCENDEVLVVERVEGKWRQKC*
Ga0072682_11086521F042112AGGLRKREVRETEVKRKKMSYDDFSPSFLQEEKYISKLAYPHLLFIQIQKIMDSIDAGGDGKEELESLKALLKPSWRVEIDVKTERCRREMEREINRIARVRERVGITTYREMKRAAIVRYVREYVQHVIEKLDEVGLLLIEGGVLRGGGVML*
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