NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072682_112734

Scaffold Ga0072682_112734


Overview

Basic Information
Taxon OID3300005099 Open in IMG/M
Scaffold IDGa0072682_112734 Open in IMG/M
Source Dataset NameHydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10880
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location NameGuaymas Basin
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F016235Metagenome248Y
F028993Metagenome189N
F040961Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0072682_11273415F009582AGGAGGMVARRGRREFIGGTGREVKEARVDVVLQRLEENIGSELKVYPSHVYRYGVNNIFQRTFAYLLGWQMSGEPIKLTATRTGLLKVAVSGGGFEEVDTLTGVATAEWSDVLEFAFVPFRIRFEAIDYPYCAMFSIDGVKWSDAVYVDGETLRDFDVNAKYIKVRRYGGTDAKYWVIAMR*
Ga0072682_11273418F028993GAGGMADIVEKAVKKRSERIAVSEAYYRDGVEHPTKDWLEEFKKAKDRRNAGLRRAMDEGLFEIGAERVGTDGWQRATLAKADRWLSGATSEEANEKYEEAMRDVAECIERARKAVEGMPTTTVEQRAEKSKRFQIEMAKCMEEKRKRR*
Ga0072682_1127343F016235AGGAGGMEENEIPSSPPIFSHKRWHHRQGYQRCVEFVGITKNDDYFGRGFPLCAVIEFKQSIYRYAPRTYELAKLLASLRLLYGEEYIEELNALAEVEYLKLKREFDRYRQMLKEKLEEEERRKKGERRWLITFGRD*
Ga0072682_1127344F040961GGAGMVNAVECRWSEEQARALITFLIAEKKRHERDIHNINRSIERIKREFNFTEADIAKCEELAWLYVNF*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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