NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072682_117979

Scaffold Ga0072682_117979


Overview

Basic Information
Taxon OID3300005099 Open in IMG/M
Scaffold IDGa0072682_117979 Open in IMG/M
Source Dataset NameHydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23430
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location NameGuaymas Basin
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038026Metagenome166Y
F050821Metagenome144N
F056227Metagenome137N
F059532Metagenome133N
F100149Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0072682_11797915F038026GAGGMLKFMIDRYGNEYNLIIEYKDRAERLIVKNLKDLLQVMADTTLYNFEYKSKYFEQPNYAKVEILWNSE*
Ga0072682_11797922F056227N/AMEDKDNIQVLVFHRDKEDKNWISRLKNGKIAILHRADTTTPQPNVPYLCKVDEKETYAIAWIQSLYAYPRVIVTPPPRRYVYLESPGDKPSIHTDILNVFDTHDLEYLYVKYPKENRKEIDTPSTESYRDIEIDVRIKIGSESTLKSSFSIKRPRNVDAKTILDEIKNKIK*
Ga0072682_11797923F059532GAGMKNILLLGDLHCGSIEGLWHPDCITREGQKIKLSPLQEELYEKWLELQEKLPNYDAVFLMGDIVHGLGSKEFGKDVIDCDLHDQLQCAVKLLKPIVENKKVVVISGSRYHSSIDYDMDRGLAEVLHAKFGGAISNVRLKGTGVIINIAHGVGSRPVYLGTRMNQDIFNAVLTEHFLKMPDVSVIVRAHFHVYSYFSICNKHFIYIPGWNAIRKGRFVTRWYFRQPDIGAVLLSVDDNDNIYVKPYLFKLKSERKNIYVL*
Ga0072682_11797924F100149AGGMFWSEEEIEILKSLWVRPDITSKFIKERYLPHRTINAIQKKASSLGLAKEKIKIDYDKIREIIL*
Ga0072682_11797933F050821GGAMIVKEMYCNHCKRKTFHECQSNELWRCIQCHNTQFEILDIKEDEIDWSTPTRYVYRSGELAYITLALAPDILRLNELKNLIEGKRVRVPLFKIKDEFLPKYY*
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