NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072682_120303

Scaffold Ga0072682_120303


Overview

Basic Information
Taxon OID3300005099 Open in IMG/M
Scaffold IDGa0072682_120303 Open in IMG/M
Source Dataset NameHydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2960
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location NameGuaymas Basin
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038026Metagenome166Y
F056227Metagenome137N
F100149Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0072682_12030310F038026GAGGMLKFIIHKNEDEYILIIEYEDRAERLLASNLKNLLQVMADTLLYNFEGKSKYFNQSYHAKIEIT*
Ga0072682_1203032F100149N/AMYWSKEEEEILKSLWKKPDITAKIIKERHLPHRTINAIQKKASSLGLTKEKIKIDYEKVNEIIL*
Ga0072682_1203034F056227N/AMEDKDIQVLVFHRDKDDKNWISRLANGKVAILHRADPTIPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRVIITPPPRRFVYLESPGDKPAIHSDILSIFDTHDLEYLYVRYPKENRKEVDIPSTESYRDVNIDLRIKIGSESTIKYSCTIKRPRNMDAKTILDEIKSKIE*
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