NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066808_1017344

Scaffold Ga0066808_1017344


Overview

Basic Information
Taxon OID3300005159 Open in IMG/M
Scaffold IDGa0066808_1017344 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Laval, Canada - mgLPB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)688
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007942Metagenome / Metatranscriptome342Y
F072059Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0066808_10173441F007942N/ARNERLRTLTAEVASRLGISQNELIEQAIEHEVVARGAMLSEDLRAAADRLTELTQEQYERMQRRNLERFVAGEGLFEPVQARPIPRTAAVDSVAVDRSLRARDVTAIYRSGRAELA*
Ga0066808_10173442F072059GAGMTAPSWQEDNPKNLSLIQTNATQLINELRATAAERKLLTPEELCRWHSRLYAGCEVPVADYVGHFRGDPAVPELIDYEVGLGARLKDGNLEKMGVWARRVADEMSAVLAGLNA

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