Basic Information | |
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Taxon OID | 3300005159 Open in IMG/M |
Scaffold ID | Ga0066808_1017344 Open in IMG/M |
Source Dataset Name | Soil and rhizosphere microbial communities from Laval, Canada - mgLPB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 688 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Laval, Canada | |||||||
Coordinates | Lat. (o) | 45.54 | Long. (o) | -73.72 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007942 | Metagenome / Metatranscriptome | 342 | Y |
F072059 | Metagenome / Metatranscriptome | 121 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066808_10173441 | F007942 | N/A | RNERLRTLTAEVASRLGISQNELIEQAIEHEVVARGAMLSEDLRAAADRLTELTQEQYERMQRRNLERFVAGEGLFEPVQARPIPRTAAVDSVAVDRSLRARDVTAIYRSGRAELA* |
Ga0066808_10173442 | F072059 | GAG | MTAPSWQEDNPKNLSLIQTNATQLINELRATAAERKLLTPEELCRWHSRLYAGCEVPVADYVGHFRGDPAVPELIDYEVGLGARLKDGNLEKMGVWARRVADEMSAVLAGLNA |
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