NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066823_10121725

Scaffold Ga0066823_10121725


Overview

Basic Information
Taxon OID3300005163 Open in IMG/M
Scaffold IDGa0066823_10121725 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Laval, Canada - mgHMB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)555
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039028Metagenome164N
F044135Metagenome155N

Sequences

Protein IDFamilyRBSSequence
Ga0066823_101217251F044135GAGGMKTIATGYAAILGLVGALALTGMNCSVAQTQAGADGRITVSQYCAPLEEDSPNARRFYCRSGA*
Ga0066823_101217252F039028N/AAALIAATQSAAAAPGDRRDVGQPGQGYDGTYQGYPLSDWYRTDGW*

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