NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066869_10002841

Scaffold Ga0066869_10002841


Overview

Basic Information
Taxon OID3300005165 Open in IMG/M
Scaffold IDGa0066869_10002841 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Laval, Canada - mgHMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2024
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001239Metagenome / Metatranscriptome740Y
F004912Metagenome / Metatranscriptome419N

Sequences

Protein IDFamilyRBSSequence
Ga0066869_100028412F001239AGCAGGMDAVAFVTGGQQEDAIPQGFETRWRRTVRGREIEYQSIGPYAGFGQANDPHRDSRHVRIDVTITSPTKCVFKTVVTTEYSRGASRESFGDATSEAATLDFNKVRRFDIEDGDSPNVVIEGAGWMCKQGACQDDVKIAISAPRQEAPARAIESKRHAMDFIKKACPGLPRDR*
Ga0066869_100028413F004912GGTGGVTPTSVVFGEDPSPTVGKYSCSLDNIVGLQTNSQTGTRFAGRIDAYAQQKFFVTIEENKQLPEDRCFSPDALDDLKKLRRGEKPGTNSKAYFLDPLMFFTACQAQFRLSTNGSPIDSLYHSDNLNIFRDEFSQFWIKNGLSYIWQFHDLKGNAYVAEGKCEKIN*
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