NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066869_10047259

Scaffold Ga0066869_10047259


Overview

Basic Information
Taxon OID3300005165 Open in IMG/M
Scaffold IDGa0066869_10047259 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Laval, Canada - mgHMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)747
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004085Metagenome / Metatranscriptome454Y
F041905Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0066869_100472591F041905GGGGGMKILTSAQLFAPPKKARKTKARLDRAKLVIVKARERAAVTAQRYAAQPSTMRPM
Ga0066869_100472592F004085GGGGGMGKILVSLAFATALLALASSEASAFLYSSFVCQAVGARSVGWGRSFFIGEAKVIALSRCARRSGICTISYCVPGY*

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