NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066674_10012917

Scaffold Ga0066674_10012917


Overview

Basic Information
Taxon OID3300005166 Open in IMG/M
Scaffold IDGa0066674_10012917 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3499
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011653Metagenome / Metatranscriptome288Y
F025961Metagenome / Metatranscriptome199Y
F050267Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0066674_100129175F050267AGGTGGMGRTENRTPEEFHHLANVTQGILWQGVAAVMAARISIAESRKLCEETRELLATRRDRLFRRRPLNAR*
Ga0066674_100129176F011653GGCGGMTAAGDDDDDRPGGVARPDATDRRDPVRDQGELDRARGRHQERRKDLLPGTRAWRTDHTEIMLVEPTGGESEEVYLRVTDITTDRYIQSPLTADDLDIVAHILQIHSARLRRLVERR*
Ga0066674_100129178F025961GAGMAEDGKGYLWFEDVRVVVENMRLLCVVAGRVVPLPVVILHPDCTLASAGDVGRLGVPRRWAEQQGLCA*
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