NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066674_10094931

Scaffold Ga0066674_10094931


Overview

Basic Information
Taxon OID3300005166 Open in IMG/M
Scaffold IDGa0066674_10094931 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1382
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000415Metagenome / Metatranscriptome1168Y
F061747Metagenome / Metatranscriptome131Y
F062543Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0066674_100949311F062543N/AADLRWYLGVRCQKCHMPILFALDASDGAEKRQSLWAGKLVLTCPLENCRHQADYTGAAVSRFQKQPGKPNETGRNNEGSKSPKHKRST*
Ga0066674_100949312F061747GGAGGMKVVRVQNTSAQLKVWCERCCIRVAPNEERIVVQGKTYHSHCYSKIRTKPKVEAPEVSA*
Ga0066674_100949313F000415GGAGGLDERFNPEFTAALLGFNGEAVVYCEGISDIVAQEYAMEYTRMLQNRARGVEAQLPRIPSGLFEPNRNLIRSTLERMWKKYFPKK*
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