NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066672_10000792

Scaffold Ga0066672_10000792


Overview

Basic Information
Taxon OID3300005167 Open in IMG/M
Scaffold IDGa0066672_10000792 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10609
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009132Metagenome / Metatranscriptome322N
F016129Metagenome / Metatranscriptome249N
F031428Metagenome182N
F032621Metagenome179N

Sequences

Protein IDFamilyRBSSequence
Ga0066672_1000079211F016129GAGLGVEEEAQPKKSGSRRYIETLLGWHGEESAGGSLYQTTLLTFILEYGIVLFFGVWLVTEYFYNIYEQQYFGSFDPVFLVVVLMIASAYGFTRVIANMRSELKPRKKTSKPEDDY*
Ga0066672_100007922F031428GGAMLEPFSTGPVAMSAVRFGDSDLAKILRGVLVIVAAGLMILPAYLNYEIWKIGFNPVVSMAISLQLFAIGIVLFILAVGKERLAPKSQPQ*
Ga0066672_100007924F009132N/ALVGPENVLAHCAGVNYQVYVTDTRLLVGKRFTTGEKFMNVPTASINTLELITKSLLPPLTFAVLGAIASFLIWWFPGTRMLPLPVFPYDVAMLAGLVIFVGSLVVAWWRVGIAVLRIRVNDSQNPITVKLVSTSKAEAVFKALKG*
Ga0066672_100007929F032621GGALSSTGSNLAVQTSKAVQIGRLPPASLVYWIRLGFGVLAGVIYNLAGFGSLGVGLGTLSMITVGIGVYSVSVFLVKNLLGYGPEVLKGPNKHVTIGMGSYVIWMIFTTILLYTVLNPHPS*
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