NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066672_10020203

Scaffold Ga0066672_10020203


Overview

Basic Information
Taxon OID3300005167 Open in IMG/M
Scaffold IDGa0066672_10020203 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3468
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002368Metagenome / Metatranscriptome566Y
F034123Metagenome175N
F035684Metagenome171N

Sequences

Protein IDFamilyRBSSequence
Ga0066672_100202032F034123AGGTGGMKGMRGLFDLGGKNVLRLGLLVFSTLLIVGGSVFFYDRLVYERALSVGGVITGSSSTTQTGLNPAPGTILILAVSAVLISLSVFGFLREVFRGKRNRKTAAKESSPTAMVSLPLEIGPPLQLPSMKRDWEESPKKEEGKH*
Ga0066672_100202033F035684GAGMGLLPEFFTLLGIEIFAAMSLVSVLLDRDIPSSAQWLFQGAAALGLGQLVVTEGFGTSSVIDASRFWISIFYLTLSVCSVVGLNVYLAAVRRKTAIASAFSGTITTPTISVSALFVSSYLSGVDVGFTPLTIAILIVTSLLVGLFSYGFLHKTFKRIEKSAGPELSPASVSAPVETPKIYESLDLKGVLGEWEESQKKDQVV*
Ga0066672_100202034F002368N/AMAIQLTPTKIKGSKYLLIPKDLARLLEIEDKSVLDLTIEESETGQRLVYSIRERPHHLADN*
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Institute for Fundamental Biomedical Research
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