NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066809_10112546

Scaffold Ga0066809_10112546


Overview

Basic Information
Taxon OID3300005168 Open in IMG/M
Scaffold IDGa0066809_10112546 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Laval, Canada - mgLPC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)677
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059194Metagenome / Metatranscriptome134N
F065761Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0066809_101125461F065761GAGGMKPSAFRIERLLAKVEAEVERRGLRVRRYVFHPDEVAEAEAQGLPYVLLPRVLSRQEWLERYATPGAEAEFYARLRGGPVAFTRPGQPVAPAAPKPSAP
Ga0066809_101125462F059194GAGGMSKDFEQDFAGADESDVGPPRRGRSPTARERPFKLGPLGTLNQIIVALGKSIRAMADGTLDSQVGARICNGLGIMRACLETRKLEQLESRMDEIADRVANERTGAARERTSTHEAQRLSY
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