NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071327_1013227

Scaffold Ga0071327_1013227


Overview

Basic Information
Taxon OID3300005170 Open in IMG/M
Scaffold IDGa0071327_1013227 Open in IMG/M
Source Dataset NameWorm MetaG Olavius vacuus BAHAMAS.1 (version 1)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5083
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003742Metagenome471Y
F056951Metagenome137Y
F068202Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0071327_10132271F068202GAGMNMSHDSTSLKKYSGDCLKLAKQRYSILSEMMLFRNYCIFSGST
Ga0071327_10132272F056951N/AMSMDSIIEVFYYLKIMLIATKHIVDNNLAFSKTAHWTSCMQHSPNLSTSLFLTYDPKSPDVIGEHHCL*
Ga0071327_10132273F003742N/AMCAPNKTKKGNNAFSYLFRTHLAITISTMVSGRLGAMSRMEVFLLEA*

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